Fix the issues that AutoDev has brought to your attention;
The importance of binning your dataset cannot be overstated. It will trade "useless" resolution for improved signal, making your dataset much quicker and easier to process, while allowing you to pull out more detail.
StarTools does more than just help you make "pretty pictures".
With a suitable dataset, workflows in StarTools are simple, replicable and short.
As a result Wipe will, likewise, struggle in such cases.
AutoDev, in the presence of any issues, brings out those issues, just like it would with real detail.
You can convert everything you see to a format you find convenient. Give it a try!